ENSGALG00000003272


Gallus gallus

Features
Gene ID: ENSGALG00000003272
  
Biological name :KHDRBS1
  
Synonyms : KH domain-containing, RNA-binding, signal transduction-associated protein 1 / KHDRBS1
  
Possible biological names infered from orthology : KH RNA binding domain containing, signal transduction associated 1 / Q07666 / Q60749
  
Species: Gallus gallus
  
Chr. number: 23
Strand: 1
Band:
Gene start: 5096859
Gene end: 5111703
  
Corresponding Affymetrix probe sets: Gga.17446.1.S1_at (Chicken Array)   Gga.3874.1.S1_at (Chicken Array)   Gga.3874.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053054
Ensembl peptide - ENSGALP00000005166
NCBI entrez gene - 374071     See in Manteia.
RefSeq - XM_015297597
RefSeq - NM_204230
RefSeq Peptide - NP_989561
swissprot - A0A1D5PJQ8
swissprot - F1NLF2
Ensembl - ENSGALG00000003272
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 khdrbs1aENSDARG00000052856Danio rerio
 khdrbs1bENSDARG00000070475Danio rerio
 Q07666ENSG00000121774Homo sapiens
 Q60749ENSMUSG00000028790Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KHDRBS2 / KH RNA binding domain containing, signal transduction associated 2 / Q5VWX1* / Q9WU01* / KH domain-containing, RNA-binding, signal transduction-associated protein 2 *ENSGALG0000001627652
KHDRBS3 / KH RNA binding domain containing, signal transduction associated 3 / O75525* / Q9R226* / KH domain-containing, RNA-binding, signal transduction-associated protein 3 *ENSGALG0000003151946
QKI / Q9YH18 / Protein quaking / Qk* / Q9QYS9* / Q96PU8* / QKI, KH domain containing RNA binding*ENSGALG0000001155526


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR032335  Sam68, tyrosine-rich domain
 IPR032571  KHDRBS, Qua1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IEA
 biological_processGO:0009967 positive regulation of signal transduction IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045948 positive regulation of translational initiation IEA
 biological_processGO:0046831 regulation of RNA export from nucleus IEA
 biological_processGO:0046833 positive regulation of RNA export from nucleus IEA
 biological_processGO:0048024 regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0051259 protein complex oligomerization IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005070 SH3/SH2 adaptor activity IEA
 molecular_functionGO:0008143 poly(A) binding IEA
 molecular_functionGO:0008266 poly(U) RNA binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
PTK6 Regulates Proteins Involved in RNA Processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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