ENSDARG00000053058


Danio rerio

Features
Gene ID: ENSDARG00000053058
  
Biological name :rps11
  
Synonyms : ribosomal protein S11 / rps11
  
Possible biological names infered from orthology : P62280 / P62281
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 37787229
Gene end: 37789244
  
Corresponding Affymetrix probe sets: Dr.1339.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000069513
NCBI entrez gene - 406686     See in Manteia.
RefSeq - NM_213377
RefSeq Peptide - NP_998542
swissprot - Q7ZV05
ZFIN ID - ZDB-GENE-040426-2701
Ensembl - ENSDARG00000053058
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS11ENSGALG00000017299Gallus gallus
 RPS11ENSG00000142534Homo sapiens
 Rps11ENSMUSG00000003429Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-159f12.2 / RPS11* / P62280* / P62281* / ribosomal protein S11*ENSDARG0000009360685


Protein motifs (from Interpro)
Interpro ID Name
 IPR000266  Ribosomal protein S17/S11
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019979  Ribosomal protein S17, conserved site
 IPR028333  Ribosomal protein S17, archaeal/eukaryotic
 IPR032440  40S ribosomal protein S11, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain quality , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
midbrain hindbrain boundary quality , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
yolk quality , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000142 peripheral nervous system peripheral nervous system chromosome amount , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001094 whole organism whole organism shape , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk necrotic , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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