ENSG00000142534


Homo sapiens

Features
Gene ID: ENSG00000142534
  
Biological name :RPS11
  
Synonyms : P62280 / ribosomal protein S11 / RPS11
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.33
Gene start: 49496365
Gene end: 49499689
  
Corresponding Affymetrix probe sets: 200031_s_at (Human Genome U133 Plus 2.0 Array)   213350_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000470375
Ensembl peptide - ENSP00000470447
Ensembl peptide - ENSP00000471873
Ensembl peptide - ENSP00000471874
Ensembl peptide - ENSP00000270625
NCBI entrez gene - 6205     See in Manteia.
OMIM - 180471
RefSeq - NM_001015
RefSeq Peptide - NP_001006
swissprot - P62280
swissprot - M0QZ90
swissprot - M0QZC5
swissprot - M0R1H5
swissprot - M0R1H6
Ensembl - ENSG00000142534
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps11ENSDARG00000053058Danio rerio
 si:dkey-159f12.2ENSDARG00000093606Danio rerio
 RPS11ENSGALG00000017299Gallus gallus
 Rps11ENSMUSG00000003429Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000266  Ribosomal protein S17/S11
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019979  Ribosomal protein S17, conserved site
 IPR028333  Ribosomal protein S17, archaeal/eukaryotic
 IPR032440  40S ribosomal protein S11, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0019083 viral transcription TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus HDA
 cellular_componentGO:0005737 cytoplasm HDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019843 rRNA binding IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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