ENSDARG00000053101


Danio rerio

Features
Gene ID: ENSDARG00000053101
  
Biological name :prpf38b
  
Synonyms : pre-mRNA processing factor 38B / prpf38b
  
Possible biological names infered from orthology : Pre-mRNA-splicing factor 38B / Q5VTL8 / Q80SY5
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 45655294
Gene end: 45663945
  
Corresponding Affymetrix probe sets: Dr.2143.1.A1_at (Zebrafish Array)   NM_213489_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000112649
Ensembl peptide - ENSDARP00000069565
NCBI entrez gene - 406810     See in Manteia.
RefSeq - NM_213489
RefSeq - XM_005171371
RefSeq - XM_005171372
RefSeq Peptide - NP_998654
swissprot - F1Q7F0
swissprot - E9QD55
ZFIN ID - ZDB-GENE-040426-2878
Ensembl - ENSDARG00000053101
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041097Gallus gallus
 ENSGALG00000001972Gallus gallus
 Q5VTL8ENSG00000134186Homo sapiens
 Q80SY5ENSMUSG00000027881Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005037  Pre-mRNA-splicing factor 38


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr