ENSG00000134186


Homo sapiens

Features
Gene ID: ENSG00000134186
  
Biological name :PRPF38B
  
Synonyms : pre-mRNA processing factor 38B / PRPF38B / Q5VTL8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p13.3
Gene start: 108692323
Gene end: 108701803
  
Corresponding Affymetrix probe sets: 218040_at (Human Genome U133 Plus 2.0 Array)   230270_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359042
Ensembl peptide - ENSP00000359038
Ensembl peptide - ENSP00000359039
NCBI entrez gene - 55119     See in Manteia.
RefSeq - XM_017001598
RefSeq - NM_018061
RefSeq - XM_011541687
RefSeq - XM_017001596
RefSeq - XM_017001597
RefSeq Peptide - NP_001336686
RefSeq Peptide - NP_060531
swissprot - A0A0A0MRN0
swissprot - Q5VTL8
Ensembl - ENSG00000134186
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf38bENSDARG00000053101Danio rerio
 ENSGALG00000041097Gallus gallus
 ENSGALG00000001972Gallus gallus
 Q80SY5ENSMUSG00000027881Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005037  Pre-mRNA-splicing factor 38


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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