ENSMUSG00000027881


Mus musculus

Features
Gene ID: ENSMUSG00000027881
  
Biological name :Prpf38b
  
Synonyms : Pre-mRNA-splicing factor 38B / Prpf38b / Q80SY5
  
Possible biological names infered from orthology : pre-mRNA processing factor 38B / Q5VTL8
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F3
Gene start: 108902805
Gene end: 108911727
  
Corresponding Affymetrix probe sets: 10501447 (MoGene1.0st)   1428674_at (Mouse Genome 430 2.0 Array)   1452869_at (Mouse Genome 430 2.0 Array)   1455016_at (Mouse Genome 430 2.0 Array)   1456506_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142929
Ensembl peptide - ENSMUSP00000143724
Ensembl peptide - ENSMUSP00000029480
NCBI entrez gene - 66921     See in Manteia.
MGI - MGI:1914171
RefSeq - XM_006501914
RefSeq - XM_006501915
RefSeq - NM_025845
RefSeq Peptide - NP_080121
swissprot - Q80SY5
swissprot - A0A0G2JGW4
swissprot - A0A0G2JEW4
Ensembl - ENSMUSG00000027881
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf38bENSDARG00000053101Danio rerio
 ENSGALG00000041097Gallus gallus
 ENSGALG00000001972Gallus gallus
 Q5VTL8ENSG00000134186Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005037  Pre-mRNA-splicing factor 38


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Prkab1tm1b(KOMP)Wtsi/Prkab1tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Prkab1tm1b(KOMP)Wtsi/Orl

 MP:0013293 embryonic lethality prior to tooth bud stage "death prior to the appearance of tooth buds (Mus: E12-E12.5)" [MGI:smb]
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Allelic Composition: Prkab1tm1b(KOMP)Wtsi/Prkab1tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Prkab1tm1b(KOMP)Wtsi/Orl

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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