ENSDARG00000053446


Danio rerio

Features
Gene ID: ENSDARG00000053446
  
Biological name :sub1a
  
Synonyms : sub1a / SUB1 homolog, transcriptional regulator a
  
Possible biological names infered from orthology : Activated RNA polymerase II transcriptional coactivator p15 / P11031 / P53999 / SUB1 / SUB1 homolog, transcriptional regulator
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 8091144
Gene end: 8098099
  
Corresponding Affymetrix probe sets: Dr.15428.1.S1_at (Zebrafish Array)   NM_001020540_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000069967
Ensembl peptide - ENSDARP00000118111
Ensembl peptide - ENSDARP00000149014
NCBI entrez gene - 553561     See in Manteia.
RefSeq - NM_001281997
RefSeq - NM_001020540
RefSeq Peptide - NP_001018376
RefSeq Peptide - NP_001268926
swissprot - Q504B1
ZFIN ID - ZDB-GENE-050522-151
Ensembl - ENSDARG00000053446
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000034905Gallus gallus
 SUB1ENSGALG00000003248Gallus gallus
 SUB1ENSG00000113387Homo sapiens
 Sub1ENSMUSG00000022205Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sub1b / SUB1 homolog, transcriptional regulator b / SUB1* / P53999* / P11031* / SUB1 homolog, transcriptional regulator* / Activated RNA polymerase II transcriptional coactivator p15 *ENSDARG0000000772078


Protein motifs (from Interpro)
Interpro ID Name
 IPR003173  Transcriptional coactivator p15 (PC4)
 IPR009044  ssDNA-binding transcriptional regulator


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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