ENSGALG00000003248


Gallus gallus

Features
Gene ID: ENSGALG00000003248
  
Biological name :SUB1
  
Synonyms : Activated RNA polymerase II transcriptional coactivator p15 / Q5ZK63 / SUB1
  
Possible biological names infered from orthology : P11031 / P53999 / SUB1 homolog, transcriptional regulator
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 9801318
Gene end: 9816323
  
Corresponding Affymetrix probe sets: Gga.11479.1.S1_at (Chicken Array)   Gga.4904.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005126
Ensembl peptide - ENSGALP00000047899
NCBI entrez gene - 427425     See in Manteia.
RefSeq - NM_001008479
RefSeq Peptide - NP_001008479
swissprot - Q5ZK63
Ensembl - ENSGALG00000003248
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sub1aENSDARG00000053446Danio rerio
 sub1bENSDARG00000007720Danio rerio
 SUB1ENSG00000113387Homo sapiens
 Sub1ENSMUSG00000022205Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SUB1* / P11031* / P53999* / SUB1 homolog, transcriptional regulator* / Activated RNA polymerase II transcriptional coactivator p15 *ENSGALG0000003490596
ENSGALG0000002714751


Protein motifs (from Interpro)
Interpro ID Name
 IPR003173  Transcriptional coactivator p15 (PC4)
 IPR009044  ssDNA-binding transcriptional regulator


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr