ENSDARG00000053728


Danio rerio

Features
Gene ID: ENSDARG00000053728
  
Biological name :ttll3
  
Synonyms : ttll3 / tubulin tyrosine ligase-like family, member 3
  
Possible biological names infered from orthology : A4Q9E5 / ARPC4-TTLL3 / ARPC4-TTLL3 readthrough / Q9Y4R7 / tubulin tyrosine ligase like 3
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 40329308
Gene end: 40352215
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000094767
NCBI entrez gene - 724000     See in Manteia.
RefSeq - NM_001045305
RefSeq Peptide - NP_001038770
swissprot - F1QZA3
ZFIN ID - ZDB-GENE-060616-182
Ensembl - ENSDARG00000053728
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000044133Gallus gallus
 ENSGALG00000032828Gallus gallus
 ARPC4-TTLL3ENSG00000250151Homo sapiens
 TTLL3ENSG00000214021Homo sapiens
 Ttll3ENSMUSG00000030276Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ttll5 / tubulin tyrosine ligase-like family, member 5 / Q6EMB2* / tubulin tyrosine ligase like 5*ENSDARG0000003679316
ttll6 / tubulin tyrosine ligase-like family, member 6 / A4Q9E8* / Q8N841* / tubulin tyrosine ligase like 6*ENSDARG0000005402315
ttll9 / tubulin tyrosine ligase-like family, member 9 / A2APC3* / Q3SXZ7* / tubulin tyrosine ligase like 9*ENSDARG0000006280614
ttll7 / tubulin tyrosine ligase-like family, member 7 / Q6ZT98* / tubulin tyrosine ligase like 7*ENSDARG0000006297314
ttll2 / tubulin tyrosine ligase-like family, member 2 / Q9BWV7* / tubulin tyrosine ligase like 2*ENSDARG0000007785312
ttll4 / tubulin tyrosine ligase-like family, member 4 / Q14679* / Q80UG8* / tubulin tyrosine ligase like 4*ENSDARG0000007893512
ttll1 / tubulin tyrosine ligase-like family, member 1 / O95922* / Q91V51* / tubulin tyrosine ligase like 1*ENSDARG0000009077812
ttll10 / tubulin tyrosine ligase-like family, member 10 / Q6ZVT0* / tubulin tyrosine ligase like 10*ENSDARG0000009047211
ttll11 / tubulin tyrosine ligase-like family, member 11 / A4Q9F4* / Q8NHH1* / tubulin tyrosine ligase like 11*ENSDARG0000006037411


Protein motifs (from Interpro)
Interpro ID Name
 IPR004344  Tubulin-tyrosine ligase/Tubulin polyglutamylase
 IPR013815  ATP-grasp fold, subdomain 1
 IPR027753  Tubulin monoglycylase TTLL3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006464 cellular protein modification process IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
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 ZFA:0000019 epiphysis epiphysis bilateral symmetry , abnormal
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 ZFA:0000048 olfactory placode olfactory placode cilium decreased length , abnormal
olfactory placode cilium malformed , abnormal
olfactory placode cilium decreased amount , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle increased size , abnormal
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 ZFA:0000114 heart heart mislocalised , abnormal
heart bilateral symmetry , abnormal
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 ZFA:0000151 pronephros pronephros cystic , abnormal
pronephros cilium direction , abnormal
pronephros cilium inverted , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis curved ventral , abnormal
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 ZFA:0001117 post-vent region post-vent region curved , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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