ENSDARG00000053864


Danio rerio

Features
Gene ID: ENSDARG00000053864
  
Biological name :elmsan1b
  
Synonyms : ELM2 and Myb/SANT-like domain containing 1b / elmsan1b
  
Possible biological names infered from orthology : ELM2 and Myb/SANT domain containing 1 / ELMSAN1 / Q6PJG2
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 37301860
Gene end: 37365668
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128560
Ensembl peptide - ENSDARP00000070457
Ensembl peptide - ENSDARP00000155356
NCBI entrez gene - 560411     See in Manteia.
RefSeq - XM_017351828
swissprot - E7FFR7
ZFIN ID - ZDB-GENE-131121-13
Ensembl - ENSDARG00000053864
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ELMSAN1ENSGALG00000009282Gallus gallus
 Q6PJG2ENSG00000156030Homo sapiens
 Elmsan1ENSMUSG00000042507Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
elmsan1a / ELM2 and Myb/SANT-like domain containing 1a / Q6PJG2* / ELMSAN1* / ELM2 and Myb/SANT domain containing 1*ENSDARG0000001144542
BX000363.1 / Q96PN7* / TRERF1* / transcriptional regulating factor 1*ENSDARG0000008863117
si:dkey-19b23.10ENSDARG0000009841014
znf541 / zinc finger protein 541 / Q0GGX2* / Q9H0D2* / Zfp541*ENSDARG0000005218812


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR013087  Zinc finger C2H2-type
 IPR017884  SANT domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0000118 histone deacetylase complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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