ENSDARG00000054201


Danio rerio

Features
Gene ID: ENSDARG00000054201
  
Biological name :rnf40
  
Synonyms : ring finger protein 40 / rnf40
  
Possible biological names infered from orthology : O75150 / Q3U319
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 28910762
Gene end: 28933282
  
Corresponding Affymetrix probe sets: Dr.9754.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130936
Ensembl peptide - ENSDARP00000070816
Ensembl peptide - ENSDARP00000071044
swissprot - A0A0R4ID58
swissprot - F1QMP3
swissprot - F1QXU6
ZFIN ID - ZDB-GENE-030131-6607
Ensembl - ENSDARG00000054201
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF40ENSG00000103549Homo sapiens
 Rnf40ENSMUSG00000030816Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf20 / ring finger protein 20, E3 ubiquitin protein ligase / Q5DTM8* / Q5VTR2* / ring finger protein 20*ENSDARG0000001666451


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010390 histone monoubiquitination IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA


Pathways (from Reactome)
Pathway description
E3 ubiquitin ligases ubiquitinate target proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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