ENSDARG00000016664


Danio rerio

Features
Gene ID: ENSDARG00000016664
  
Biological name :rnf20
  
Synonyms : ring finger protein 20, E3 ubiquitin protein ligase / rnf20
  
Possible biological names infered from orthology : Q5DTM8 / Q5VTR2 / ring finger protein 20
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 21065434
Gene end: 21098343
  
Corresponding Affymetrix probe sets: Dr.6244.1.S1_at (Zebrafish Array)   Dr.8608.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000107071
Ensembl peptide - ENSDARP00000153848
NCBI entrez gene - 402838     See in Manteia.
RefSeq - NM_001256175
RefSeq Peptide - NP_001243104
swissprot - F1R926
ZFIN ID - ZDB-GENE-130404-2
Ensembl - ENSDARG00000016664
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF20ENSGALG00000015548Gallus gallus
 RNF20ENSG00000155827Homo sapiens
 Rnf20ENSMUSG00000028309Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf40 / ring finger protein 40 / O75150* / Q3U319*ENSDARG0000005420151


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010390 histone monoubiquitination IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA


Pathways (from Reactome)
Pathway description
E3 ubiquitin ligases ubiquitinate target proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000016664 rnf20 / ring finger protein 20, E3 ubiquitin protein ligase / Q5DTM8* / Q5VTR2* / ring finger protein 20*  / complex






 

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