ENSG00000155827


Homo sapiens

Features
Gene ID: ENSG00000155827
  
Biological name :RNF20
  
Synonyms : Q5VTR2 / ring finger protein 20 / RNF20
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q31.1
Gene start: 101533851
Gene end: 101563344
  
Corresponding Affymetrix probe sets: 222683_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363952
Ensembl peptide - ENSP00000419201
Ensembl peptide - ENSP00000418924
Ensembl peptide - ENSP00000373772
NCBI entrez gene - 56254     See in Manteia.
OMIM - 607699
RefSeq - XM_011518862
RefSeq - NM_019592
RefSeq Peptide - NP_062538
swissprot - C9JWJ4
swissprot - C9JXC9
swissprot - Q5VTR2
swissprot - C9J0A5
Ensembl - ENSG00000155827
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf20ENSDARG00000016664Danio rerio
 RNF20ENSGALG00000015548Gallus gallus
 Rnf20ENSMUSG00000028309Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF40 / O75150 / ring finger protein 40ENSG0000010354959


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013956  E3 ubiquitin ligase Bre1
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IDA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IMP
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IMP
 biological_processGO:0010390 histone monoubiquitination IEA
 biological_processGO:0016567 protein ubiquitination TAS
 biological_processGO:0016574 histone ubiquitination IEA
 biological_processGO:0030336 negative regulation of cell migration IDA
 biological_processGO:0031062 positive regulation of histone methylation IEA
 biological_processGO:0033523 histone H2B ubiquitination IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:1900364 negative regulation of mRNA polyadenylation IMP
 biological_processGO:2001168 positive regulation of histone H2B ubiquitination IMP
 cellular_componentGO:0000151 ubiquitin ligase complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0033503 HULC complex IDA
 molecular_functionGO:0002039 p53 binding IDA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IDA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0042393 histone binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
E3 ubiquitin ligases ubiquitinate target proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000155827 RNF20 / Q5VTR2 / ring finger protein 20  / complex
 ENSG00000103549 RNF40 / O75150 / ring finger protein 40  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr