ENSGALG00000015548


Gallus gallus

Features
Gene ID: ENSGALG00000015548
  
Biological name :RNF20
  
Synonyms : E3 ubiquitin-protein ligase BRE1A / RNF20
  
Possible biological names infered from orthology : Q5DTM8 / Q5VTR2 / ring finger protein 20
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 65079251
Gene end: 65097640
  
Corresponding Affymetrix probe sets: GgaAffx.11764.1.S1_at (Chicken Array)   GgaAffx.9904.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025019
NCBI entrez gene - 427310     See in Manteia.
RefSeq - XM_015280605
RefSeq - NM_001031434
RefSeq - XM_015280603
RefSeq - XM_015280604
RefSeq - XM_015280602
RefSeq Peptide - NP_001026605
swissprot - F1N9A6
Ensembl - ENSGALG00000015548
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf20ENSDARG00000016664Danio rerio
 RNF20ENSG00000155827Homo sapiens
 Rnf20ENSMUSG00000028309Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0010390 histone monoubiquitination IEA
 biological_processGO:0016574 histone ubiquitination IEA
 biological_processGO:0030336 negative regulation of cell migration IEA
 biological_processGO:0031062 positive regulation of histone methylation IEA
 biological_processGO:0033523 histone H2B ubiquitination IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:1900364 negative regulation of mRNA polyadenylation IEA
 biological_processGO:2001168 positive regulation of histone H2B ubiquitination IEA
 cellular_componentGO:0000151 ubiquitin ligase complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0033503 HULC complex IEA
 molecular_functionGO:0002039 p53 binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0042393 histone binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000015548 RNF20 / E3 ubiquitin-protein ligase BRE1A / Q5DTM8* / Q5VTR2* / ring finger protein 20*  / complex






 

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