ENSDARG00000054942


Danio rerio

Features
Gene ID: ENSDARG00000054942
  
Biological name :lgals2a
  
Synonyms : lectin, galactoside-binding, soluble, 2a / lgals2a
  
Possible biological names infered from orthology : galectin 1 / LGALS1 / P09382 / P16045
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 28953274
Gene end: 28961518
  
Corresponding Affymetrix probe sets: Dr.13015.1.S1_at (Zebrafish Array)   NM_212894_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094378
Ensembl peptide - ENSDARP00000121564
NCBI entrez gene - 405830     See in Manteia.
RefSeq - NM_212894
RefSeq Peptide - NP_998059
swissprot - Q6IQI2
ZFIN ID - ZDB-GENE-050318-2
Ensembl - ENSDARG00000054942
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CG-16ENSGALG00000042020Gallus gallus
 LGALS1ENSGALG00000012420Gallus gallus
 LGALS1ENSG00000100097Homo sapiens
 Lgals1ENSMUSG00000068220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lgals1l1 / lectin, galactoside-binding, soluble, 1 (galectin 1)-like 1 / LGALS1* / P16045* / P09382* / galectin 1*ENSDARG0000008871180
lgals2b / lectin, galactoside-binding, soluble, 2b / LGALS1* / P16045* / P09382* / galectin 1*ENSDARG0000003815346


Protein motifs (from Interpro)
Interpro ID Name
 IPR001079  Galectin, carbohydrate recognition domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001944 vasculature development IMP
 biological_processGO:0002040 sprouting angiogenesis IGI
 biological_processGO:0048741 skeletal muscle fiber development IMP
 biological_processGO:0050769 positive regulation of neurogenesis IMP
 biological_processGO:0090303 positive regulation of wound healing IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0016936 galactoside binding IDA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0043236 laminin binding IDA


Pathways (from Reactome)
Pathway description
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
post-vent region bent , abnormal
Show

 ZFA:0005145 muscle muscle contractile fiber disorganized , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr