ENSDARG00000055563


Danio rerio

Features
Gene ID: ENSDARG00000055563
  
Biological name :rnasen
  
Synonyms : ribonuclease type III, nuclear / rnasen
  
Possible biological names infered from orthology : DROSHA / drosha ribonuclease III / Q5HZJ0 / Q9NRR4 / Ribonuclease 3
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 13344896
Gene end: 13390841
  
Corresponding Affymetrix probe sets: Dr.11510.1.A1_at (Zebrafish Array)   Dr.11510.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000083450
Ensembl peptide - ENSDARP00000153862
NCBI entrez gene - 567505     See in Manteia.
RefSeq - NM_001110472
RefSeq Peptide - NP_001103942
swissprot - F1QKS5
ZFIN ID - ZDB-GENE-070209-23
Ensembl - ENSDARG00000055563
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DROSHAENSGALG00000012916Gallus gallus
 DROSHAENSG00000113360Homo sapiens
 DroshaENSMUSG00000022191Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000999  Ribonuclease III domain
 IPR011907  Ribonuclease III
 IPR014720  Double-stranded RNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0016075 rRNA catabolic process IEA
 biological_processGO:0030422 production of siRNA involved in RNA interference IBA
 biological_processGO:0031053 primary miRNA processing IBA
 biological_processGO:0031054 pre-miRNA processing IBA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IBA
 molecular_functionGO:0004525 ribonuclease III activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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