ENSDARG00000056410


Danio rerio

Features
Gene ID: ENSDARG00000056410
  
Biological name :fdx1
  
Synonyms : fdx1 / ferredoxin 1
  
Possible biological names infered from orthology : P10109 / P46656
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 29520696
Gene end: 29535453
  
Corresponding Affymetrix probe sets: Dr.13680.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113657
Ensembl peptide - ENSDARP00000124949
Ensembl peptide - ENSDARP00000118328
Ensembl peptide - ENSDARP00000073363
NCBI entrez gene - 100126232     See in Manteia.
RefSeq - XM_001922687
RefSeq - XM_021478966
swissprot - E9QJD9
swissprot - E7F7J1
ZFIN ID - ZDB-GENE-071015-2
Ensembl - ENSDARG00000056410
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FDX1ENSGALG00000026507Gallus gallus
 FDX1ENSG00000137714Homo sapiens
 Fdx1ENSMUSG00000032051Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fdx1b / ferredoxin 1bENSDARG0000003895643
fdx1l / ferredoxin 1-like / FDX2* / Q6P4F2* / AC011511.1* / ferredoxin 2*ENSDARG0000005219029


Protein motifs (from Interpro)
Interpro ID Name
 IPR001041  2Fe-2S ferredoxin-type iron-sulfur binding domain
 IPR001055  Adrenodoxin
 IPR012675  Beta-grasp domain superfamily
 IPR018298  Adrenodoxin, iron-sulphur binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:1904087 negative regulation of epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0009055 electron transfer activity IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051537 2 iron, 2 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
Mitochondrial iron-sulfur cluster biogenesis
Pregnenolone biosynthesis
Endogenous sterols
Electron transport from NADPH to Ferredoxin


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000056410 fdx1 / ferredoxin 1 / P10109* / P46656*  / reaction
 ENSDARG00000089369 fdxr / ferredoxin reductase / P22570*  / reaction / complex






 

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contact: otassy@igbmc.fr