ENSDARG00000056414


Danio rerio

Features
Gene ID: ENSDARG00000056414
  
Biological name :usp1
  
Synonyms : ubiquitin specific peptidase 1 / usp1
  
Possible biological names infered from orthology : O94782 / Q8BJQ2
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 32394502
Gene end: 32411727
  
Corresponding Affymetrix probe sets: Dr.20720.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000126161
Ensembl peptide - ENSDARP00000073367
NCBI entrez gene - 322007     See in Manteia.
RefSeq - NM_199579
RefSeq Peptide - NP_955873
swissprot - I3IT99
swissprot - F1QNF4
ZFIN ID - ZDB-GENE-030131-726
Ensembl - ENSDARG00000056414
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP1ENSGALG00000010957Gallus gallus
 USP1ENSG00000162607Homo sapiens
 Usp1ENSMUSG00000028560Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain
 IPR033815  Ubiquitin specific peptidase 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006282 regulation of DNA repair IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Recognition of DNA damage by PCNA-containing replication complex
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk bent , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr