ENSDARG00000056517


Danio rerio

Features
Gene ID: ENSDARG00000056517
  
Biological name :thoc3
  
Synonyms : thoc3 / THO complex 3
  
Possible biological names infered from orthology : Q8VE80 / Q96J01 / THO complex subunit 3
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 25505468
Gene end: 25510955
  
Corresponding Affymetrix probe sets: Dr.13333.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000073472
NCBI entrez gene - 445302     See in Manteia.
RefSeq - NM_001003758
RefSeq Peptide - NP_001003758
swissprot - Q6AXK9
ZFIN ID - ZDB-GENE-040808-14
Ensembl - ENSDARG00000056517
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 THOC3ENSGALG00000024172Gallus gallus
 THOC3ENSG00000051596Homo sapiens
 Thoc3ENSMUSG00000025872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbl1xr1b / transducin (beta)-like 1 X-linked receptor 1b / Q9BZK7* / Q8BHJ5* / TBL1XR1* / transducin beta like 1 X-linked receptor 1* / F-box-like/WD repeat-containing protein TBL1XR1 *ENSDARG0000000896624
tbl1x / transducin beta like 1 X-linked / TBL1Y* / Q9QXE7* / O60907* / Q9BQ87* / transducin beta like 1 Y-linked* / F-box-like/WD repeat-containing protein TBL1X *ENSDARG0000006043823
tbl1xr1a / transducin (beta)-like 1 X-linked receptor 1a / Q9BZK7* / Q8BHJ5* / TBL1XR1* / transducin beta like 1 X-linked receptor 1* / F-box-like/WD repeat-containing protein TBL1XR1 *ENSDARG0000005869619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR013979  Translation initiation factor, beta propellor-like domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR020472  G-protein beta WD-40 repeat
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006406 mRNA export from nucleus IBA
 cellular_componentGO:0000445 THO complex part of transcription export complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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