ENSMUSG00000025872


Mus musculus

Features
Gene ID: ENSMUSG00000025872
  
Biological name :Thoc3
  
Synonyms : Q8VE80 / Thoc3 / THO complex subunit 3
  
Possible biological names infered from orthology : Q96J01 / THO complex 3
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: B1
Gene start: 54458837
Gene end: 54468849
  
Corresponding Affymetrix probe sets: 10409322 (MoGene1.0st)   1423970_at (Mouse Genome 430 2.0 Array)   1423971_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000026990
NCBI entrez gene - 73666     See in Manteia.
MGI - MGI:1920916
RefSeq - NM_028597
RefSeq Peptide - NP_082873
swissprot - Q8VE80
Ensembl - ENSMUSG00000025872
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thoc3ENSDARG00000056517Danio rerio
 THOC3ENSGALG00000024172Gallus gallus
 THOC3ENSG00000051596Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BHJ5 / Tbl1xr1 / F-box-like/WD repeat-containing protein TBL1XR1 / Q9BZK7* / transducin beta like 1 X-linked receptor 1*ENSMUSG0000002763022
Tbl1x / Q9QXE7 / F-box-like/WD repeat-containing protein TBL1X / TBL1Y* / Q9BQ87* / O60907* / transducin beta like 1 X-linked* / transducin beta like 1 Y-linked*ENSMUSG0000002524622


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR013979  Translation initiation factor, beta propellor-like domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR020472  G-protein beta WD-40 repeat
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006406 mRNA export from nucleus IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0046784 viral mRNA export from host cell nucleus IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0000346 transcription export complex IEA
 cellular_componentGO:0000445 THO complex part of transcription export complex IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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