ENSDARG00000056649


Danio rerio

Features
Gene ID: ENSDARG00000056649
  
Biological name :htatsf1
  
Synonyms : HIV-1 Tat specific factor 1 / htatsf1
  
Possible biological names infered from orthology : HIV Tat-specific factor 1 homolog / O43719 / Q8BGC0
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 26652859
Gene end: 26667243
  
Corresponding Affymetrix probe sets: Dr.20844.1.S1_at (Zebrafish Array)   Dr.25746.1.A1_at (Zebrafish Array)   NM_201203_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000073630
NCBI entrez gene - 394178     See in Manteia.
RefSeq - NM_201203
RefSeq Peptide - NP_957497
swissprot - F1QUB8
ZFIN ID - ZDB-GENE-040426-1578
Ensembl - ENSDARG00000056649
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HTATSF1ENSGALG00000006410Gallus gallus
 O43719ENSG00000102241Homo sapiens
 Q8BGC0ENSMUSG00000067873Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034392  TatSF1-like, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr