ENSMUSG00000067873


Mus musculus

Features
Gene ID: ENSMUSG00000067873
  
Biological name :Htatsf1
  
Synonyms : HIV Tat-specific factor 1 homolog / Htatsf1 / Q8BGC0
  
Possible biological names infered from orthology : HIV-1 Tat specific factor 1 / O43719
  
Species: Mus musculus
  
Chr. number: X
Strand: 1
Band: A6
Gene start: 57053583
Gene end: 57067183
  
Corresponding Affymetrix probe sets: 10599781 (MoGene1.0st)   1431058_at (Mouse Genome 430 2.0 Array)   1431059_x_at (Mouse Genome 430 2.0 Array)   1454760_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000086027
Ensembl peptide - ENSMUSP00000110399
NCBI entrez gene - 72459     See in Manteia.
MGI - MGI:1919709
RefSeq - NM_028242
RefSeq - NM_029371
RefSeq Peptide - NP_082518
RefSeq Peptide - NP_083647
swissprot - Q8BGC0
Ensembl - ENSMUSG00000067873
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 htatsf1ENSDARG00000056649Danio rerio
 HTATSF1ENSGALG00000006410Gallus gallus
 O43719ENSG00000102241Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034392  TatSF1-like, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr