ENSGALG00000006410


Gallus gallus

Features
Gene ID: ENSGALG00000006410
  
Biological name :HTATSF1
  
Synonyms : HIV-1 Tat specific factor 1 / HTATSF1
  
Possible biological names infered from orthology : HIV Tat-specific factor 1 homolog / O43719 / Q8BGC0
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 4359428
Gene end: 4372582
  
Corresponding Affymetrix probe sets: Gga.15900.1.S1_s_at (Chicken Array)   Gga.2638.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010334
NCBI entrez gene - 422245     See in Manteia.
RefSeq - XM_001233031
swissprot - F1P1G7
Ensembl - ENSGALG00000006410
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 htatsf1ENSDARG00000056649Danio rerio
 O43719ENSG00000102241Homo sapiens
 Q8BGC0ENSMUSG00000067873Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr