ENSDARG00000056729


Danio rerio

Features
Gene ID: ENSDARG00000056729
  
Biological name :her4.2
  
Synonyms : hairy-related 4, tandem duplicate 2 / her4.2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 21469203
Gene end: 21471022
  
Corresponding Affymetrix probe sets: Dr.5372.1.S1_x_at (Zebrafish Array)   Dr.5372.9.S1_s_at (Zebrafish Array)   NM_131090_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094981
NCBI entrez gene - 30301     See in Manteia.
RefSeq - NM_131090
RefSeq Peptide - NP_571165
swissprot - B0V3D4
ZFIN ID - ZDB-GENE-060815-1
Ensembl - ENSDARG00000056729
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
her4.2 / her4.4 / hairy-related 4, tandem duplicate 2ENSDARG0000009442699
her4.4 / hairy-related 4, tandem duplicate 4ENSDARG0000000982298
her4.1 / hairy-related 4, tandem duplicate 1ENSDARG0000005673298
her4.3 / hairy-related 4, tandem duplicate 3ENSDARG0000007077097
her15.1 / hairy and enhancer of split-related 15, tandem duplicate 1ENSDARG0000005456238
her15.2 / hairy and enhancer of split-related 15, tandem duplicate 2ENSDARG0000005456038
her12 / hairy-related 12ENSDARG0000003296334
her2 / hairy-related 2 / HES5* / Q5TA89* / hes family bHLH transcription factor 5*ENSDARG0000003820525


Protein motifs (from Interpro)
Interpro ID Name
 IPR003650  Orange domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0048936 peripheral nervous system neuron axonogenesis IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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