ENSDARG00000056732


Danio rerio

Features
Gene ID: ENSDARG00000056732
  
Biological name :her4.1
  
Synonyms : hairy-related 4, tandem duplicate 1 / her4.1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 21452557
Gene end: 21453614
  
Corresponding Affymetrix probe sets: Dr.20386.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000073730
NCBI entrez gene - 100149863     See in Manteia.
RefSeq - NM_001103128
RefSeq Peptide - NP_001096598
swissprot - Q90466
ZFIN ID - ZDB-GENE-980526-521
Ensembl - ENSDARG00000056732
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
her4.4 / hairy-related 4, tandem duplicate 4ENSDARG0000000982299
her4.3 / hairy-related 4, tandem duplicate 3ENSDARG0000007077099
her4.2 / her4.4 / hairy-related 4, tandem duplicate 2ENSDARG0000009442699
her4.2 / hairy-related 4, tandem duplicate 2ENSDARG0000005672998
her15.2 / hairy and enhancer of split-related 15, tandem duplicate 2ENSDARG0000005456036
her15.1 / hairy and enhancer of split-related 15, tandem duplicate 1ENSDARG0000005456236
her12 / hairy-related 12ENSDARG0000003296333
her2 / hairy-related 2 / HES5* / Q5TA89* / hes family bHLH transcription factor 5*ENSDARG0000003820525


Protein motifs (from Interpro)
Interpro ID Name
 IPR003650  Orange domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0048936 peripheral nervous system neuron axonogenesis IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000295 trigeminal ganglion trigeminal ganglion axon decreased size , abnormal
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 ZFA:0000588 statoacoustic (VIII) ganglion statoacoustic (VIII) ganglion increased size , abnormal
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 ZFA:0007068 otic epithelium otic epithelium neuroblast increased amount , abnormal
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 ZFA:0009063 peripheral neuron peripheral neuron decreased length , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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