ENSDARG00000056914


Danio rerio

Features
Gene ID: ENSDARG00000056914
  
Biological name :emg1
  
Synonyms : emg1 / EMG1 N1-specific pseudouridine methyltransferase
  
Possible biological names infered from orthology : O35130 / Q92979 / Ribosomal RNA small subunit methyltransferase NEP1
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 17254489
Gene end: 17258111
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000073952
NCBI entrez gene - 678588     See in Manteia.
RefSeq - NM_001040337
RefSeq Peptide - NP_001035427
swissprot - F1QQ17
ZFIN ID - ZDB-GENE-060421-2909
Ensembl - ENSDARG00000056914
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EMG1ENSGALG00000014568Gallus gallus
 EMG1ENSG00000126749Homo sapiens
 EMG1ENSG00000268439Homo sapiens
 Emg1ENSMUSG00000004268Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005304  Ribosomal biogenesis, methyltransferase, EMG1/NEP1
 IPR029028  Alpha/beta knot methyltransferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0070475 rRNA base methylation IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0019843 rRNA binding IBA
 molecular_functionGO:0070037 rRNA (pseudouridine) methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr