ENSG00000126749


Homo sapiens

Features
Gene ID: ENSG00000126749
  
Biological name :EMG1
  
Synonyms : EMG1 / EMG1, N1-specific pseudouridine methyltransferase / Q92979
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: p13.31
Gene start: 6970893
Gene end: 6979941
  
Corresponding Affymetrix probe sets: 209233_at (Human Genome U133 Plus 2.0 Array)   213615_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000479546
Ensembl peptide - ENSP00000470560
NCBI entrez gene - 10436     See in Manteia.
OMIM - 611531
RefSeq - NM_001320049
RefSeq - NM_006331
RefSeq Peptide - NP_001306978
RefSeq Peptide - NP_006322
swissprot - Q92979
swissprot - A0A087WVM7
Ensembl - ENSG00000126749
  
Related genetic diseases (OMIM): 211180 - Bowen-Conradi syndrome, 211180
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 emg1ENSDARG00000056914Danio rerio
 EMG1ENSGALG00000014568Gallus gallus
 Emg1ENSMUSG00000004268Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EMG1 / EMG1, N1-specific pseudouridine methyltransferaseENSG0000026843987


Protein motifs (from Interpro)
Interpro ID Name
 IPR005304  Ribosomal biogenesis, methyltransferase, EMG1/NEP1
 IPR029028  Alpha/beta knot methyltransferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0032259 methylation IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0042274 ribosomal small subunit biogenesis ISS
 biological_processGO:0070475 rRNA base methylation IBA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003723 RNA binding ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019843 rRNA binding IEA
 molecular_functionGO:0070037 rRNA (pseudouridine) methyltransferase activity IDA


Pathways (from Reactome)
Pathway description
rRNA modification in the nucleus and cytosol
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000448 Prominent nose 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001367 Abnormality of the joints "An abnormality of the joints, i.e., of the articulations where two bones join." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001518 Low birth weight 
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 HP:0001522 Death in infancy 
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 HP:0001838 Vertical talus 
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 HP:0002101 Abnormal lung lobation "Defects in the formation of pulmonary lobules." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0008846 Severe intrauterine growth retardation 
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 HP:0008850 Postnatal growth retardation, severe 
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 HP:0008872 Feeding problems in infancy 
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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