ENSDARG00000056932


Danio rerio

Features
Gene ID: ENSDARG00000056932
  
Biological name :tfip11
  
Synonyms : tfip11 / tuftelin interacting protein 11
  
Possible biological names infered from orthology : Q9ERA6 / Q9UBB9
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 17847040
Gene end: 17866100
  
Corresponding Affymetrix probe sets: Dr.7492.1.A1_at (Zebrafish Array)   NM_001002721_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000073961
Ensembl peptide - ENSDARP00000143900
NCBI entrez gene - 436994     See in Manteia.
RefSeq - NM_001002721
RefSeq Peptide - NP_001002721
swissprot - F1QQ02
ZFIN ID - ZDB-GENE-040718-479
Ensembl - ENSDARG00000056932
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5ZII9ENSGALG00000005623Gallus gallus
 Q9UBB9ENSG00000100109Homo sapiens
 Q9ERA6ENSMUSG00000029345Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR022159  Tuftelin interacting protein, N-terminal domain
 IPR022783  GC-rich sequence DNA-binding factor-like domain
 IPR024933  Septin and tuftelin interacting protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000029 hindbrain hindbrain hydrocephalic , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000217 inner ear inner ear decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved dorsal , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr