ENSDARG00000057021


Danio rerio

Features
Gene ID: ENSDARG00000057021
  
Biological name :vps36
  
Synonyms : vacuolar protein sorting 36 homolog (S. cerevisiae) / vps36
  
Possible biological names infered from orthology : Q86VN1 / Q91XD6 / vacuolar protein sorting 36 / vacuolar protein sorting 36 homolog
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 24643079
Gene end: 24680425
  
Corresponding Affymetrix probe sets: Dr.21065.1.S1_at (Zebrafish Array)   NM_199977_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000113042
Ensembl peptide - ENSDARP00000154878
Ensembl peptide - ENSDARP00000122484
Ensembl peptide - ENSDARP00000074049
NCBI entrez gene - 335810     See in Manteia.
RefSeq - NM_199977
RefSeq Peptide - NP_956271
swissprot - E9QH92
swissprot - E9QGR9
swissprot - F1QFF9
ZFIN ID - ZDB-GENE-030131-7753
Ensembl - ENSDARG00000057021
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS36ENSGALG00000017026Gallus gallus
 VPS36ENSG00000136100Homo sapiens
 Vps36ENSMUSG00000031479Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011991  ArsR-like helix-turn-helix domain
 IPR011993  PH-like domain superfamily
 IPR021648  Vacuolar protein sorting protein 36, GLUE domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032509 endosome transport via multivesicular body sorting pathway IEA
 cellular_componentGO:0000814 ESCRT II complex IEA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IEA
 molecular_functionGO:0043130 ubiquitin binding IEA


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr