Manteia

ENSDARG00000058105

Danio rerio

Features

Gene ID:	ENSDARG00000058105

Biological name :	rpl36a

Synonyms :	P61485 / ribosomal protein L36A / rpl36a

Possible biological names infered from orthology :	60S ribosomal protein L36a / Gm6525 / P83881 / P83882 / Q969Q0 / ribosomal protein L36a like / ribosomal protein L36A, pseudogene 1 / RPL36A-HNRNPH2 / RPL36A-HNRNPH2 readthrough / RPL36AL / Rpl36a-ps1

Species:	Danio rerio

Chr. number:	5
Strand:	1
Band:
Gene start:	22510639
Gene end:	22515186

Corresponding Affymetrix probe sets:	Dr.19935.1.S1_at (Zebrafish Array)

Cross references:	Ensembl peptide - ENSDARP00000075363 NCBI entrez gene - 195819 See in Manteia. RefSeq - NM_001202510 RefSeq Peptide - NP_001189439 swissprot - P61485 ZFIN ID - ZDB-GENE-020423-1 Ensembl - ENSDARG00000058105

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name

Similarity(%)

No match

Protein motifs (from Interpro)

Interpro ID	Name
IPR000552	Ribosomal protein L44e
IPR011332	Zinc-binding ribosomal protein

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0006412	translation	IEA
biological_process	GO:0043009	chordate embryonic development	IMP
biological_process	GO:0051726	regulation of cell cycle	IMP
cellular_component	GO:0005622	intracellular	IEA
cellular_component	GO:0005737	cytoplasm	IEA
cellular_component	GO:0005840	ribosome	IEA
cellular_component	GO:0022625	cytosolic large ribosomal subunit	IBA
molecular_function	GO:0003735	structural constituent of ribosome	IEA

Pathways (from Reactome)

Pathway description

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000006	ball	ball increased size , abnormal	Show
ZFA:0000008	brain	brain necrotic , abnormal	Show
ZFA:0000012	central nervous system	central nervous system necrotic , abnormal	Show
ZFA:0000029	hindbrain	hindbrain opaque , abnormal	Show
ZFA:0000035	lens	lens increased size , abnormal	Show
ZFA:0000042	midbrain hindbrain boundary	midbrain hindbrain boundary condensed , abnormal	Show
ZFA:0000084	yolk	yolk circular , abnormal	Show
ZFA:0000106	extension	extension decreased thickness , abnormal extension deformed , abnormal extension yolk absent , abnormal	Show
ZFA:0000107	eye	eye decreased size , abnormal	Show
ZFA:0000108	fin	fin deformed , abnormal	Show
ZFA:0000110	fourth ventricle	fourth ventricle opaque , abnormal fourth ventricle distended , abnormal	Show
ZFA:0000138	otic placode	otic placode decreased size , abnormal	Show
ZFA:0000142	peripheral nervous system	peripheral nervous system chromosome amount , abnormal peripheral nervous system nerve neoplastic , abnormal	Show
ZFA:0000445	optic tectum	optic tectum increased size , abnormal	Show
ZFA:0001094	whole organism	whole organism viability , abnormal whole organism decreased size , abnormal	Show
ZFA:0001114	head	head decreased size , abnormal	Show
ZFA:0001115	trunk	trunk decreased thickness , abnormal	Show
ZFA:0001261	ventricular system	ventricular system increased size , abnormal	Show
ZFA:0009256	nucleate erythrocyte	nucleate erythrocyte decreased amount , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr