ENSDARG00000058270


Danio rerio

Features
Gene ID: ENSDARG00000058270
  
Biological name :COLGALT1
  
Synonyms : A5PMF6 / COLGALT1 / si:ch211-114l13.7
  
Possible biological names infered from orthology : collagen beta(1-O)galactosyltransferase 1 / Procollagen galactosyltransferase 1 / Q8K297 / Q8NBJ5
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 58013076
Gene end: 58036509
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000075565
NCBI entrez gene - 567859     See in Manteia.
swissprot - A5PMF6
ZFIN ID - ZDB-GENE-070424-114
Ensembl - ENSDARG00000058270
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8NBJ5ENSG00000130309Homo sapiens
 Q8K297ENSMUSG00000034807Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
colgalt1 / collagen beta(1-O)galactosyltransferase 1 / Q8K297* / Q8NBJ5* / Procollagen galactosyltransferase 1 *ENSDARG0000007397476
colgalt2 / collagen beta(1-O)galactosyltransferase 2 / Q6NVG7* / Q8IYK4* / Procollagen galactosyltransferase 2 *ENSDARG0000001467061
cercam / cerebral endothelial cell adhesion molecule / A3KGW5* / Q5T4B2* / Inactive glycosyltransferase 25 family member 3 *ENSDARG0000007904955
si:ch211-13f8.2 / Q8IYK4* / Q6NVG7* / COLGALT2* / Procollagen galactosyltransferase 2 * / collagen beta(1-O)galactosyltransferase 2*ENSDARG0000007829955
plod1a / procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a / PLOD1* / Q9R0E2* / Q02809* / procollagen-lysine,2-oxoglutarate 5-dioxygenase 1*ENSDARG0000005974617
plod3 / wu:fb72h05 / O60568* / Q9R0E1* / procollagen-lysine,2-oxoglutarate 5-dioxygenase 3*ENSDARG0000007631716
plod2 / procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 / O00469* / Q9R0B9*ENSDARG0000001182116


Protein motifs (from Interpro)
Interpro ID Name
 IPR002654  Glycosyl transferase, family 25
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:1904028 positive regulation of collagen fibril organization ISS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen ISS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0050211 procollagen galactosyltransferase activity ISS


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr