ENSDARG00000059634


Danio rerio

Features
Gene ID: ENSDARG00000059634
  
Biological name :thumpd3
  
Synonyms : thumpd3 / THUMP domain containing 3
  
Possible biological names infered from orthology : Mus musculus THUMP domain containing 3 (Thumpd3), transcript variant 2, mRNA. / P97770 / Q9BV44
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 21992820
Gene end: 22022636
  
Corresponding Affymetrix probe sets: Dr.6933.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000137475
Ensembl peptide - ENSDARP00000077505
Ensembl peptide - ENSDARP00000115829
NCBI entrez gene - 561938     See in Manteia.
RefSeq - NM_001089394
RefSeq - XM_017356502
RefSeq - XM_021476896
RefSeq Peptide - NP_001082863
swissprot - F1QMS0
swissprot - E9QJ61
swissprot - F1QH23
ZFIN ID - ZDB-GENE-030131-9745
Ensembl - ENSDARG00000059634
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000008394Gallus gallus
 ENSGALG00000044813Gallus gallus
 Q9BV44ENSG00000134077Homo sapiens
 P97770ENSMUSG00000030264Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
thumpd2 / THUMP domain containing 2 / Q9BTF0* / Q9CZB3* / THUMP domain-containing protein 2 *ENSDARG0000009307020


Protein motifs (from Interpro)
Interpro ID Name
 IPR000241  Putative RNA methylase domain
 IPR004114  THUMP domain
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030488 tRNA methylation IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0016423 tRNA (guanine) methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr