ENSMUSG00000030264


Mus musculus

Features
Gene ID: ENSMUSG00000030264
  
Biological name :Thumpd3
  
Synonyms : Mus musculus THUMP domain containing 3 (Thumpd3), transcript variant 2, mRNA. / P97770 / Thumpd3
  
Possible biological names infered from orthology : Q9BV44 / THUMP domain containing 3
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: E3
Gene start: 113046225
Gene end: 113068273
  
Corresponding Affymetrix probe sets: 10540544 (MoGene1.0st)   1417684_at (Mouse Genome 430 2.0 Array)   1454061_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000120509
Ensembl peptide - ENSMUSP00000145411
Ensembl peptide - ENSMUSP00000144805
Ensembl peptide - ENSMUSP00000032398
NCBI entrez gene - 14911     See in Manteia.
MGI - MGI:1277973
RefSeq - XM_006505577
RefSeq - XM_006505579
RefSeq - XM_006505578
RefSeq - NM_001355266
RefSeq - NM_008188
RefSeq Peptide - NP_001342195
RefSeq Peptide - NP_032214
swissprot - P97770
swissprot - D3YYB2
swissprot - A0A0N4SUS5
swissprot - A0A0N4SW81
Ensembl - ENSMUSG00000030264
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thumpd3ENSDARG00000059634Danio rerio
 ENSGALG00000008394Gallus gallus
 ENSGALG00000044813Gallus gallus
 Q9BV44ENSG00000134077Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9CZB3 / Thumpd2 / THUMP domain-containing protein 2 / Q9BTF0* / THUMP domain containing 2*ENSMUSG0000002424620


Protein motifs (from Interpro)
Interpro ID Name
 IPR000241  Putative RNA methylase domain
 IPR004114  THUMP domain
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030488 tRNA methylation IBA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016423 tRNA (guanine) methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr