ENSDARG00000059657


Danio rerio

Features
Gene ID: ENSDARG00000059657
  
Biological name :mks1
  
Synonyms : Meckel syndrome, type 1 / mks1
  
Possible biological names infered from orthology : Meckel syndrome type 1 protein homolog / Q5SW45 / Q9NXB0
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 56090851
Gene end: 56119028
  
Corresponding Affymetrix probe sets: Dr.20384.1.A1_at (Zebrafish Array)   NM_001077373_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000077569
NCBI entrez gene - 556706     See in Manteia.
RefSeq - NM_001077373
RefSeq Peptide - NP_001070841
swissprot - A3QK09
ZFIN ID - ZDB-GENE-030131-3813
Ensembl - ENSDARG00000059657
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MKS1ENSGALG00000030979Gallus gallus
 MKS1ENSG00000011143Homo sapiens
 Mks1ENSMUSG00000034121Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010796  B9 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0060030 dorsal convergence IMP
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Hedgehog off state
Anchoring of the basal body to the plasma membrane
Hedgehog on state


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord undulate , abnormal
Show

 ZFA:0000155 somite somite deformed , abnormal
Show

 ZFA:0000529 kidney kidney edematous , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism decreased thickness , abnormal
whole organism decreased life span , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell decreased amount , ameliorated
neuromast hair cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr