ENSG00000011143


Homo sapiens

Features
Gene ID: ENSG00000011143
  
Biological name :MKS1
  
Synonyms : Meckel syndrome, type 1 / MKS1 / Q9NXB0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q22
Gene start: 58205437
Gene end: 58219605
  
Corresponding Affymetrix probe sets: 1555820_a_at (Human Genome U133 Plus 2.0 Array)   218630_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463826
Ensembl peptide - ENSP00000462423
Ensembl peptide - ENSP00000462460
Ensembl peptide - ENSP00000316631
Ensembl peptide - ENSP00000376827
Ensembl peptide - ENSP00000376828
Ensembl peptide - ENSP00000442096
Ensembl peptide - ENSP00000462129
Ensembl peptide - ENSP00000462179
Ensembl peptide - ENSP00000462411
NCBI entrez gene - 54903     See in Manteia.
OMIM - 609883
RefSeq - XM_017024805
RefSeq - NM_001165927
RefSeq - NM_001321268
RefSeq - NM_001321269
RefSeq - NM_001330397
RefSeq - NM_017777
RefSeq - XM_005257485
RefSeq - XM_006721965
RefSeq - XM_011524957
RefSeq - XM_011524958
RefSeq - XM_011524959
RefSeq - XM_011524960
RefSeq - XM_017024803
RefSeq - XM_017024804
RefSeq Peptide - NP_001308197
RefSeq Peptide - NP_001308198
RefSeq Peptide - NP_001317326
RefSeq Peptide - NP_060247
RefSeq Peptide - NP_001159399
swissprot - J3KSF4
swissprot - J3QQP4
swissprot - J9PBQ5
swissprot - H0Y2S2
swissprot - Q9NXB0
swissprot - J3KRR3
swissprot - J3KRV5
swissprot - J3KSB7
swissprot - J3KSC6
Ensembl - ENSG00000011143
  
Related genetic diseases (OMIM): 249000 - Meckel syndrome 1, 249000
  615990 - Bardet-Biedl syndrome 13, 615990
  617121 - Joubert syndrome 28, 617121
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mks1ENSDARG00000059657Danio rerio
 MKS1ENSGALG00000030979Gallus gallus
 Mks1ENSMUSG00000034121Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010796  B9 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0010669 epithelial structure maintenance IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0044458 motile cilium assembly IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 biological_processGO:0048754 branching morphogenesis of an epithelial tube IEA
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 biological_processGO:0060271 cilium assembly ISS
 biological_processGO:0060322 head development IEA
 biological_processGO:0060828 regulation of canonical Wnt signaling pathway IEA
 biological_processGO:0061009 common bile duct development IEA
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 biological_processGO:1901620 regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 biological_processGO:1990403 embryonic brain development IEA
 biological_processGO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005814 centriole IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0035869 ciliary transition zone IEA
 cellular_componentGO:0036038 MKS complex ISS
 cellular_componentGO:0036064 ciliary basal body IDA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Hedgehog off state
Anchoring of the basal body to the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000033 Ambiguous genitalia, male 
Show

 HP:0000037 Male pseudohermaphroditism "Hermaphroditism refers to a discrepancy between the morphology of the gonads and that of the external genitalia. In male pseudohermaphroditism, the genotype is male (XY) and the external genitalia are imcompletely virilized, ambiguous, or complete female. If gonads are present, they are testes." [HPO:curators]
Show

 HP:0000061 Ambiguous genitalia, female 
Show

 HP:0000068 Urethral atresia 
Show

 HP:0000069 Abnormality of the ureters "An abnormality of the ureters, the ductal organs that transport urine from the kidneys to the urinary bladder." [HPO:curators]
Show

 HP:0000073 Ureteral duplication "A developmental anomaly characterized by the presence of two, instead of one, ureter connecting a kidney to the bladder." [HPO:curators]
Show

 HP:0000100 Nephrotic syndrome 
Show

 HP:0000104 Renal agenesis 
Show

 HP:0000113 Polycystic kidney 
Show

 HP:0000130 Abnormality of the uterus "An abnormality of the uterus (womb)." [HPO:curators]
Show

 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
Show

 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000180 Lobulated tongue 
Show

 HP:0000202 Cleft lip/palate 
Show

 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
Show

 HP:0000221 Furrowed tongue "Accentuation of the grooves on the dorsal surface of the tongue." [pmid:19125428]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000276 Long face 
Show

 HP:0000293 Full cheeks 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000368 Low-set, posteriorly rotated ears 
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000426 Prominent nasal bridge 
Show

 HP:0000457 Flat nose 
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000465 Webbed neck 
Show

 HP:0000470 Short neck 
Show

 HP:0000480 Retinal coloboma 
Show

 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000488 Retinopathy 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
Show

 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
Show

 HP:0000532 Chorioretinal abnormality 
Show

 HP:0000556 Retinal dystrophy 
Show

 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
Show

 HP:0000572 Visual loss 
Show

 HP:0000580 Pigmentary retinopathy 
Show

 HP:0000601 Hypotelorism 
Show

 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000647 Sclerocornea 
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000657 Oculomotor apraxia 
Show

 HP:0000695 Neonatal teeth 
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0000835 Adrenal hypoplasia 
Show

 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
Show

 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0001161 Polydactyly (hands) 
Show

 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
Show

 HP:0001177 Preaxial polydactyly (hands) "Supernumerary digits located at the radial side of the hand. Polydactyly (supernumerary digits) involving the thumb occurs in many distinct forms of high variability and severity. Ranging from fleshy nubbins over varying degrees of partial duplication/splitting to completely duplicated or even triplicated thumbs or preaxial (on the radial side of the hand) supernumerary digits." [HPO:curators]
Show

 HP:0001195 Single umbilical artery 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
Show

 HP:0001320 Cerebellar vermis hypoplasia 
Show

 HP:0001321 Cerebellar hypoplasia 
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001341 Olfactory lobe agenesis 
Show

 HP:0001395 Hepatic fibrosis 
Show

 HP:0001408 Bile duct proliferation 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0001539 Omphalocele 
Show

 HP:0001562 Oligohydramnios 
Show

 HP:0001600 Abnormality of the larynx 
Show

 HP:0001623 breech presentation 
Show

 HP:0001643 Patent ductus arteriosus 
Show

 HP:0001651 Dextrocardia "A left-right reversal (or "mirror reflection") of the anatomical location of the heart in which the heart is locate on the right side in stead of the left." [HPO:sdoelken]
Show

 HP:0001671 Abnormality of the cardiac septa 
Show

 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
Show

 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
Show

 HP:0001737 Pancreatic cysts 
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
Show

 HP:0001747 Accessory spleen "An accessory spleen is a round, iso-echogenic, homogenic and smooth structure and is seen as a normal varient mostly on the medial contour of the spleen, near the hilus or around the lower pole. This has no pathogenic relevance." [HPO:curators]
Show

 HP:0001829 Polydactyly (feet) 
Show

 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
Show

 HP:0001883 Talipes 
Show

 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
Show

 HP:0002084 Encephalocele 
Show

 HP:0002085 Occipital encephalocele 
Show

 HP:0002089 Pulmonary hypoplasia 
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
Show

 HP:0002167 Neurological speech impairment 
Show

 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
Show

 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
Show

 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
Show

 HP:0002323 Anencephaly 
Show

 HP:0002419 Molar tooth sign on MRI 
Show

 HP:0002553 Arched eyebrows 
Show

 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
Show

 HP:0002612 Congenital hepatic fibrosis 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002876 Tachypnea, episodic 
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003241 Genital hypoplasia 
Show

 HP:0003312 Abnormal form of the vertebral bodies 
Show

 HP:0003468 Abnormalities of the vertebrae 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
Show

 HP:0004639 Elevated amniotic fluid alpha-fetoprotein "An elevation of alpha-feto protein measured in the amniotic fluid." [HPO:curators]
Show

 HP:0005343 Hypoplastic bladder 
Show

 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0006267 Placental enlargement 
Show

 HP:0006487 Bowing of the long bones 
Show

 HP:0006706 Cystic liver disease 
Show

 HP:0006870 Lobar holoprosencephaly "A type of holoprosencephaly in which most of the right and left cerebral hemispheres and lateral ventricles are separated but the most rostral aspect of the telencephalon, the frontal lobes, are fused, especially ventrally." [gc:hpe]
Show

 HP:0006872 Cerebral hypoplasia "Underdevelopment of the cerebrum." [HPO:curators]
Show

 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0008053 Aplasia/Hypoplasia of the iris "Absence or underdevelopment of the iris." [HPO:curators]
Show

 HP:0008724 Hypoplastic ovary 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0009466 Radial deviation of fingers 
Show

 HP:0010295 Aplasia/Hypoplasia of the tongue "Absence or underdevelopment of the tongue." [HPO:curators]
Show

 HP:0010442 Polydactyly 
Show

 HP:0010459 True hermaphroditism "The presence of both ovarian and testicular tissues either in the same or in opposite gonads. Affected persons have ambiguous genitalia and may have 46,XX or 46,XY karyotypes or 46,XX/XY mosaicism." [HPO:curators]
Show

 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
Show

 HP:0100732 Pancreatic fibrosis 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr