ENSDARG00000059841


Danio rerio

Features
Gene ID: ENSDARG00000059841
  
Biological name :exosc1
  
Synonyms : exosc1 / exosome component 1
  
Possible biological names infered from orthology : Exosome complex component CSL4 / Q9DAA6 / Q9Y3B2
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 54700657
Gene end: 54706039
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000078068
NCBI entrez gene - 558857     See in Manteia.
RefSeq - NM_001145567
RefSeq Peptide - NP_001139039
swissprot - B8A4H5
ZFIN ID - ZDB-GENE-080926-3
Ensembl - ENSDARG00000059841
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EXOSC1ENSGALG00000039917Gallus gallus
 EXOSC1ENSG00000171311Homo sapiens
 Exosc1ENSMUSG00000034321Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019495  Exosome complex component CSL4
 IPR022967  RNA-binding domain, S1
 IPR025721  Exosome complex component, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0000176 nuclear exosome (RNase complex) IBA
 cellular_componentGO:0000178 exosome (RNase complex) IEA
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
KSRP (KHSRP) binds and destabilizes mRNA
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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