ENSGALG00000039917


Gallus gallus

Features
Gene ID: ENSGALG00000039917
  
Biological name :EXOSC1
  
Synonyms : EXOSC1 / exosome component 1
  
Possible biological names infered from orthology : Exosome complex component CSL4 / Q9DAA6 / Q9Y3B2
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 22341902
Gene end: 22343055
  
Corresponding Affymetrix probe sets: Gga.12601.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053676
swissprot - A0A1D5PLG0
Ensembl - ENSGALG00000039917
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 exosc1ENSDARG00000059841Danio rerio
 EXOSC1ENSG00000171311Homo sapiens
 Exosc1ENSMUSG00000034321Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019495  Exosome complex component CSL4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0000178 exosome (RNase complex) IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 3 to 5 exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
KSRP (KHSRP) binds and destabilizes mRNA
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr