ENSDARG00000059883


Danio rerio

Features
Gene ID: ENSDARG00000059883
  
Biological name :trpv1
  
Synonyms : transient receptor potential cation channel, subfamily V, member 1 / trpv1
  
Possible biological names infered from orthology : Q704Y3 / Q8NER1 / Q9WTR1 / Q9Y5S1 / transient receptor potential cation channel subfamily V member 2 / TRPV2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 42136359
Gene end: 42158556
  
Corresponding Affymetrix probe sets: Dr.16529.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000078166
Ensembl peptide - ENSDARP00000133320
Ensembl peptide - ENSDARP00000115992
NCBI entrez gene - 561195     See in Manteia.
RefSeq - NM_001126399
RefSeq Peptide - NP_001119871
swissprot - B6RTA2
swissprot - B0S711
ZFIN ID - ZDB-GENE-030912-8
Ensembl - ENSDARG00000059883
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPV1ENSGALG00000004649Gallus gallus
 TRPV2ENSGALG00000004519Gallus gallus
 TRPV1ENSG00000196689Homo sapiens
 TRPV2ENSG00000187688Homo sapiens
 Trpv1ENSMUSG00000005952Mus musculus
 Trpv2ENSMUSG00000018507Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpv4 / transient receptor potential cation channel, subfamily V, member 4 / Q9EPK8* / Q9HBA0*ENSDARG0000006194141
trpv6 / transient receptor potential cation channel, subfamily V, member 6 / TRPV5* / P69744* / Q9H1D0* / Q9NQA5* / Q91WD2* / transient receptor potential cation channel subfamily V member 5*ENSDARG0000001449621


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR004729  Transient receptor potential channel
 IPR005821  Ion transport domain
 IPR008347  Transient receptor potential channel, vanilloid 1-4
 IPR020683  Ankyrin repeat-containing domain
 IPR024862  Transient receptor potential cation channel subfamily V
 IPR024865  Transient receptor potential channel, vanilloid 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0009408 response to heat IMP
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0040040 thermosensory behavior IMP
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IBA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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