ENSDARG00000059906


Danio rerio

Features
Gene ID: ENSDARG00000059906
  
Biological name :sdc4
  
Synonyms : sdc4 / syndecan 4
  
Possible biological names infered from orthology : O35988 / P31431
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 52663097
Gene end: 52675630
  
Corresponding Affymetrix probe sets: Dr.26392.1.A1_at (Zebrafish Array)   Dr.26405.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000078265
swissprot - F6NMW3
ZFIN ID - ZDB-GENE-061111-1
Ensembl - ENSDARG00000059906
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDC4ENSGALG00000003932Gallus gallus
 SDC4ENSG00000124145Homo sapiens
 Sdc4ENSMUSG00000017009Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sdc2 / syndecan 2 / P34741* / P43407*ENSDARG0000000273130


Protein motifs (from Interpro)
Interpro ID Name
 IPR001050  Syndecan
 IPR027789  Syndecan/Neurexin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IDA
 biological_processGO:0016477 cell migration IDA
 biological_processGO:0033627 cell adhesion mediated by integrin IDA
 biological_processGO:0042060 wound healing IDA
 biological_processGO:0043149 stress fiber assembly IDA
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005925 focal adhesion IDA
 cellular_componentGO:0009986 cell surface IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005546 phosphatidylinositol-4,5-bisphosphate binding IDA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Cell surface interactions at the vascular wall
Syndecan interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001458 cranial cartilage cranial cartilage morphology , abnormal
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 ZFA:0009091 melanocyte melanocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr