ENSGALG00000003932


Gallus gallus

Features
Gene ID: ENSGALG00000003932
  
Biological name :SDC4
  
Synonyms : P49416 / SDC4 / Syndecan-4
  
Possible biological names infered from orthology : O35988 / P31431
  
Species: Gallus gallus
  
Chr. number: 20
Strand: 1
Band:
Gene start: 5273295
Gene end: 5288746
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000006255
NCBI entrez gene - 419184     See in Manteia.
RefSeq - NM_001007869
RefSeq Peptide - NP_001007870
swissprot - P49416
Ensembl - ENSGALG00000003932
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdc4ENSDARG00000059906Danio rerio
 SDC4ENSG00000124145Homo sapiens
 Sdc4ENSMUSG00000017009Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SDC2 / syndecan-2 precursor / P34741* / P43407* / syndecan 2*ENSGALG0000003142437
SDC3 / syndecan-3 precursor / O75056* / Q64519* / syndecan 3*ENSGALG0000003518432
SDC1 / syndecan 1 / P18827* / P18828*ENSGALG0000001648028


Protein motifs (from Interpro)
Interpro ID Name
 IPR001050  Syndecan
 IPR003585  Neurexin/syndecan/glycophorin C
 IPR027789  Syndecan/Neurexin domain
 IPR030479  Syndecan, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0010762 regulation of fibroblast migration IEA
 biological_processGO:0016477 cell migration IBA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0042130 negative regulation of T cell proliferation IEA
 biological_processGO:0044319 wound healing, spreading of cells ISS
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 biological_processGO:0061098 positive regulation of protein tyrosine kinase activity ISS
 biological_processGO:0090630 activation of GTPase activity ISS
 biological_processGO:1902723 negative regulation of skeletal muscle satellite cell proliferation ISS
 biological_processGO:1902725 negative regulation of satellite cell differentiation ISS
 biological_processGO:1902766 skeletal muscle satellite cell migration ISS
 biological_processGO:1903076 regulation of protein localization to plasma membrane ISS
 biological_processGO:1903078 positive regulation of protein localization to plasma membrane ISS
 biological_processGO:1903543 positive regulation of exosomal secretion IEA
 biological_processGO:1903553 positive regulation of extracellular exosome assembly IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0070053 thrombospondin receptor activity IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Syndecan interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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