ENSGALG00000016480


Gallus gallus

Features
Gene ID: ENSGALG00000016480
  
Biological name :SDC1
  
Synonyms : SDC1 / syndecan 1
  
Possible biological names infered from orthology : P18827 / P18828
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 102005547
Gene end: 102025143
  
Corresponding Affymetrix probe sets: Gga.6597.1.S1_at (Chicken Array)   Gga.8563.1.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026538
NCBI entrez gene - 421960     See in Manteia.
RefSeq - XM_419972
swissprot - F1NV24
Ensembl - ENSGALG00000016480
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDC1ENSG00000115884Homo sapiens
 Sdc1ENSMUSG00000020592Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SDC3 / syndecan-3 precursor / O75056* / Q64519* / syndecan 3*ENSGALG0000003518427
SDC2 / syndecan-2 precursor / P34741* / P43407* / syndecan 2*ENSGALG0000003142418
SDC4 / P49416 / Syndecan-4 / O35988* / P31431*ENSGALG0000000393218


Protein motifs (from Interpro)
Interpro ID Name
 IPR001050  Syndecan
 IPR003585  Neurexin/syndecan/glycophorin C
 IPR027789  Syndecan/Neurexin domain
 IPR030479  Syndecan, conserved site
 IPR031190  Syndecan-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016477 cell migration IBA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0048627 myoblast development IEA
 biological_processGO:0055002 striated muscle cell development IEA
 biological_processGO:0060070 canonical Wnt signaling pathway IEA
 biological_processGO:1903543 positive regulation of exosomal secretion IEA
 biological_processGO:1903553 positive regulation of extracellular exosome assembly IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008022 protein C-terminus binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Syndecan interactions
Other interleukin signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000028466 IL34 / interleukin 34 / Q6ZMJ4* / Q8R1R4*  / reaction / complex






 

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