ENSGALG00000035184


Gallus gallus

Features
Gene ID: ENSGALG00000035184
  
Biological name :SDC3
  
Synonyms : SDC3 / syndecan-3 precursor
  
Possible biological names infered from orthology : O75056 / Q64519 / syndecan 3
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 439987
Gene end: 458290
  
Corresponding Affymetrix probe sets: Gga.2414.1.S1_at (Chicken Array)   Gga.3136.1.S1_at (Chicken Array)   GgaAffx.21657.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051243
NCBI entrez gene - 396343     See in Manteia.
RefSeq - NM_205383
RefSeq - XM_015297526
RefSeq Peptide - NP_990714
swissprot - A0A1D5PEN8
Ensembl - ENSGALG00000035184
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDC3ENSG00000162512Homo sapiens
 Sdc3ENSMUSG00000025743Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SDC1 / syndecan 1 / P18827* / P18828*ENSGALG0000001648020
SDC2 / syndecan-2 precursor / P34741* / P43407* / syndecan 2*ENSGALG0000003142418
SDC4 / P49416 / Syndecan-4 / O35988* / P31431*ENSGALG0000000393216


Protein motifs (from Interpro)
Interpro ID Name
 IPR001050  Syndecan
 IPR003585  Neurexin/syndecan/glycophorin C
 IPR027789  Syndecan/Neurexin domain
 IPR030479  Syndecan, conserved site
 IPR031194  Syndecan-3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035988 chondrocyte proliferation IMP
 biological_processGO:1900026 positive regulation of substrate adhesion-dependent cell spreading IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Syndecan interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr