ENSDARG00000060729


Danio rerio

Features
Gene ID: ENSDARG00000060729
  
Biological name :trim8b
  
Synonyms : trim8b / tripartite motif containing 8b
  
Possible biological names infered from orthology : Probable E3 ubiquitin-protein ligase TRIM8 / Q99PJ2 / Q9BZR9 / TRIM8 / tripartite motif containing 8
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 33916939
Gene end: 33935522
  
Corresponding Affymetrix probe sets: Dr.5637.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000080323
Ensembl peptide - ENSDARP00000124110
NCBI entrez gene - 559967     See in Manteia.
RefSeq - NM_001044914
RefSeq Peptide - NP_001038379
RefSeq Peptide - NP_001135847
swissprot - F8W4W9
swissprot - B7ZVP9
ZFIN ID - ZDB-GENE-030131-4325
Ensembl - ENSDARG00000060729
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM8ENSGALG00000036785Gallus gallus
 TRIM8ENSG00000171206Homo sapiens
 Trim8ENSMUSG00000025034Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim8a / tripartite motif containing 8a / TRIM8* / Q9BZR9* / tripartite motif containing 8*ENSDARG0000009051270
ftr87 / finTRIM family, member 87ENSDARG0000010255716
ftr73 / finTRIM family, member 73ENSDARG0000009529815
zgc:92594ENSDARG0000008951715
ftr69 / finTRIM family, member 69ENSDARG0000005264613
trim110 / tripartite motif containing 110ENSDARG0000006824010


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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