ENSDARG00000061397


Danio rerio

Features
Gene ID: ENSDARG00000061397
  
Biological name :trip12
  
Synonyms : F1RCR6 / thyroid hormone receptor interactor 12 / trip12
  
Possible biological names infered from orthology : G5E870 / Q14669
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 41232719
Gene end: 41310976
  
Corresponding Affymetrix probe sets: Dr.16497.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000122220
Ensembl peptide - ENSDARP00000082000
Ensembl peptide - ENSDARP00000112916
NCBI entrez gene - 564866     See in Manteia.
RefSeq - NM_001347668
RefSeq - XM_001919001
RefSeq - XM_005159227
RefSeq - XM_005159226
RefSeq - XM_021467672
RefSeq - XM_005159230
RefSeq - XM_005159228
RefSeq Peptide - NP_001334597
swissprot - F1RCR6
swissprot - F1Q529
swissprot - E9QHK4
ZFIN ID - ZDB-GENE-041111-262
Ensembl - ENSDARG00000061397
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIP12ENSGALG00000002929Gallus gallus
 Q14669ENSG00000153827Homo sapiens
 G5E870ENSMUSG00000026219Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hectd1 / HECT domain containing 1 / Q69ZR2* / Q9ULT8* / E3 ubiquitin-protein ligase HECTD1 * / HECT domain E3 ubiquitin protein ligase 1*ENSDARG0000005421316


Protein motifs (from Interpro)
Interpro ID Name
 IPR000569  HECT domain
 IPR004170  WWE domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR018123  WWE domain, subgroup


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process ISS
 biological_processGO:0006974 cellular response to DNA damage stimulus ISS
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0045995 regulation of embryonic development ISS
 biological_processGO:1901315 negative regulation of histone H2A K63-linked ubiquitination ISS
 biological_processGO:2000780 negative regulation of double-strand break repair ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISS
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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