ENSDARG00000062361


Danio rerio

Features
Gene ID: ENSDARG00000062361
  
Biological name :PAXBP1
  
Synonyms : PAXBP1 / zgc:158234
  
Possible biological names infered from orthology : P58501 / PAX3 and PAX7 binding protein 1 / Q9Y5B6
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 24422017
Gene end: 24442546
  
Corresponding Affymetrix probe sets: Dr.16269.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000114980
Ensembl peptide - ENSDARP00000116611
Ensembl peptide - ENSDARP00000118724
NCBI entrez gene - 563266     See in Manteia.
RefSeq - NM_001080183
RefSeq Peptide - NP_001073652
swissprot - F1Q5X8
swissprot - E9QDJ4
swissprot - F1R179
ZFIN ID - ZDB-GENE-070112-2352
Ensembl - ENSDARG00000062361
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAXBP1ENSGALG00000036833Gallus gallus
 PAXBP1ENSG00000159086Homo sapiens
 P58501ENSMUSG00000022974Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gcfc2 / GC-rich sequence DNA-binding factor 2 / P16383* / Q8BKT3*ENSDARG0000007902023


Protein motifs (from Interpro)
Interpro ID Name
 IPR012890  GC-rich sequence DNA-binding factor
 IPR022783  GC-rich sequence DNA-binding factor-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr