ENSDARG00000079020


Danio rerio

Features
Gene ID: ENSDARG00000079020
  
Biological name :gcfc2
  
Synonyms : gcfc2 / GC-rich sequence DNA-binding factor 2
  
Possible biological names infered from orthology : P16383 / Q8BKT3
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 32531854
Gene end: 32551256
  
Corresponding Affymetrix probe sets: Dr.15740.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000110163
NCBI entrez gene - 559280     See in Manteia.
RefSeq - NM_001110107
RefSeq - XM_005158732
RefSeq Peptide - NP_001103577
swissprot - E7FCK8
ZFIN ID - ZDB-GENE-080204-19
Ensembl - ENSDARG00000079020
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000045667Gallus gallus
 ENSGALG00000044622Gallus gallus
 ENSGALG00000044143Gallus gallus
 ENSGALG00000046522Gallus gallus
 ENSGALG00000044552Gallus gallus
 ENSGALG00000046148Gallus gallus
 ENSGALG00000045328Gallus gallus
 ENSGALG00000046317Gallus gallus
 ENSGALG00000046220Gallus gallus
 ENSGALG00000045250Gallus gallus
 ENSGALG00000046351Gallus gallus
 ENSGALG00000044121Gallus gallus
 ENSGALG00000046078Gallus gallus
 ENSGALG00000044558Gallus gallus
 ENSGALG00000045927Gallus gallus
 ENSGALG00000045800Gallus gallus
 ENSGALG00000046365Gallus gallus
 ENSGALG00000016732Gallus gallus
 ENSGALG00000045708Gallus gallus
 ENSGALG00000043940Gallus gallus
 ENSGALG00000044736Gallus gallus
 GCFC2ENSG00000005436Homo sapiens
 Gcfc2ENSMUSG00000035125Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PAXBP1 / zgc:158234 / P58501* / Q9Y5B6* / PAX3 and PAX7 binding protein 1*ENSDARG0000006236125


Protein motifs (from Interpro)
Interpro ID Name
 IPR012890  GC-rich sequence DNA-binding factor
 IPR022783  GC-rich sequence DNA-binding factor-like domain
 IPR028211  Pre-mRNA-splicing factor Ntr2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000390 spliceosomal complex disassembly IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0071008 U2-type post-mRNA release spliceosomal complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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