ENSMUSG00000035125


Mus musculus

Features
Gene ID: ENSMUSG00000035125
  
Biological name :Gcfc2
  
Synonyms : Gcfc2 / GC-rich sequence DNA-binding factor 2 / Q8BKT3
  
Possible biological names infered from orthology : P16383
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: C3
Gene start: 81923669
Gene end: 81959915
  
Corresponding Affymetrix probe sets: 10539220 (MoGene1.0st)   1439020_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144868
Ensembl peptide - ENSMUSP00000035644
Ensembl peptide - ENSMUSP00000138136
NCBI entrez gene - 330361     See in Manteia.
MGI - MGI:2141656
RefSeq - NM_177884
RefSeq - XM_011241391
RefSeq Peptide - NP_808552
swissprot - A0A0N4SUY0
swissprot - Q8BKT3
swissprot - S4R198
Ensembl - ENSMUSG00000035125
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gcfc2ENSDARG00000079020Danio rerio
 ENSGALG00000044552Gallus gallus
 ENSGALG00000046148Gallus gallus
 ENSGALG00000045328Gallus gallus
 ENSGALG00000046317Gallus gallus
 ENSGALG00000046220Gallus gallus
 ENSGALG00000045250Gallus gallus
 ENSGALG00000046351Gallus gallus
 ENSGALG00000044121Gallus gallus
 ENSGALG00000046078Gallus gallus
 ENSGALG00000044558Gallus gallus
 ENSGALG00000046522Gallus gallus
 ENSGALG00000045800Gallus gallus
 ENSGALG00000046365Gallus gallus
 ENSGALG00000016732Gallus gallus
 ENSGALG00000045708Gallus gallus
 ENSGALG00000043940Gallus gallus
 ENSGALG00000044736Gallus gallus
 ENSGALG00000044622Gallus gallus
 ENSGALG00000044143Gallus gallus
 ENSGALG00000045667Gallus gallus
 ENSGALG00000045927Gallus gallus
 GCFC2ENSG00000005436Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P58501 / Paxbp1 / PAX3- and PAX7-binding protein 1 / Q9Y5B6*ENSMUSG0000002297431


Protein motifs (from Interpro)
Interpro ID Name
 IPR012890  GC-rich sequence DNA-binding factor
 IPR022783  GC-rich sequence DNA-binding factor-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0071008 U2-type post-mRNA release spliceosomal complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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