ENSDARG00000062550


Danio rerio

Features
Gene ID: ENSDARG00000062550
  
Biological name :rc3h1a
  
Synonyms : rc3h1a / ring finger and CCCH-type domains 1a
  
Possible biological names infered from orthology : Q4VGL6 / Q5TC82 / RC3H1 / ring finger and CCCH-type domains 1 / Roquin-1
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 15973122
Gene end: 16016271
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000120858
Ensembl peptide - ENSDARP00000147021
Ensembl peptide - ENSDARP00000154836
NCBI entrez gene - 568568     See in Manteia.
RefSeq - NM_001082859
RefSeq - XM_005161719
RefSeq Peptide - NP_001076328
swissprot - Q1LV60
ZFIN ID - ZDB-GENE-050208-702
Ensembl - ENSDARG00000062550
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RC3H1ENSGALG00000004587Gallus gallus
 RC3H1ENSG00000135870Homo sapiens
 Rc3h1ENSMUSG00000040423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rc3h1b / ring finger and CCCH-type domains 1b / RC3H1* / Q5TC82* / Q4VGL6* / Roquin-1 * / ring finger and CCCH-type domains 1*ENSDARG0000006318263
rc3h2 / ring finger and CCCH-type domains 2 / P0C090* / Q9HBD1* / Roquin-2 *ENSDARG0000006305039


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR032671  Roquin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0042129 regulation of T cell proliferation IEA
 biological_processGO:0050863 regulation of T cell activation IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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