ENSDARG00000063050


Danio rerio

Features
Gene ID: ENSDARG00000063050
  
Biological name :rc3h2
  
Synonyms : rc3h2 / ring finger and CCCH-type domains 2
  
Possible biological names infered from orthology : P0C090 / Q9HBD1 / Roquin-2
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 9595575
Gene end: 9655820
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000153657
Ensembl peptide - ENSDARP00000086213
Ensembl peptide - ENSDARP00000113795
NCBI entrez gene - 559834     See in Manteia.
swissprot - F1Q4N1
swissprot - Q1LXV6
ZFIN ID - ZDB-GENE-060503-694
Ensembl - ENSDARG00000063050
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RC3H2ENSGALG00000001253Gallus gallus
 RC3H2ENSG00000056586Homo sapiens
 Rc3h2ENSMUSG00000075376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rc3h1b / ring finger and CCCH-type domains 1b / RC3H1* / Q5TC82* / Q4VGL6* / Roquin-1 * / ring finger and CCCH-type domains 1*ENSDARG0000006318246
rc3h1a / ring finger and CCCH-type domains 1a / RC3H1* / Q5TC82* / Q4VGL6* / Roquin-1 * / ring finger and CCCH-type domains 1*ENSDARG0000006255042


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR032670  Roquin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0016567 protein ubiquitination IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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