ENSGALG00000001253


Gallus gallus

Features
Gene ID: ENSGALG00000001253
  
Biological name :RC3H2
  
Synonyms : RC3H2 / ring finger and CCCH-type domains 2
  
Possible biological names infered from orthology : P0C090 / Q9HBD1 / Roquin-2
  
Species: Gallus gallus
  
Chr. number: 17
Strand: -1
Band:
Gene start: 9268844
Gene end: 9284385
  
Corresponding Affymetrix probe sets: Gga.10669.1.S1_s_at (Chicken Array)   Gga.18203.1.S1_s_at (Chicken Array)   GgaAffx.23616.1.S1_s_at (Chicken Array)   GgaAffx.834.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001900
NCBI entrez gene - 417109     See in Manteia.
RefSeq - XM_004946005
RefSeq - XM_004946006
swissprot - F1NZ02
Ensembl - ENSGALG00000001253
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rc3h2ENSDARG00000063050Danio rerio
 RC3H2ENSG00000056586Homo sapiens
 Rc3h2ENSMUSG00000075376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RC3H1 / ring finger and CCCH-type domains 1 / Q4VGL6* / Q5TC82* / Roquin-1 *ENSGALG0000000458747


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR032670  Roquin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IEA
 biological_processGO:0001782 B cell homeostasis IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0042098 T cell proliferation IEA
 biological_processGO:0043029 T cell homeostasis IEA
 biological_processGO:0048286 lung alveolus development IEA
 biological_processGO:0048535 lymph node development IEA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0060173 limb development IEA
 biological_processGO:0061470 T follicular helper cell differentiation IEA
 biological_processGO:1901224 positive regulation of NIK/NF-kappaB signaling IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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